Fixes #3897

"Remember me" is only available when logging in with password. I see
this as an "advanced" feature. The passwordless login flow is easy so
not a big hassle to do it once a day.

Organisation that wants to can set `SESSION_COOKIE_AGE` to a custom
value, e.g. set it to two weeks to reagin the old behaviour.

To disable "Remember me" set `SESSION_COOKIE_AGE` to the same value as
`SESSION_COOKIE_AGE_LONG`

This PR also:

* removes unused code is_public_site
* removes unused code register_extra_text
* removes all use of link-button* classes. Buttons are now only handled
by the button class.
* add a tiny border radius to all buttons (this is something we
implement on all elements in Hypha)

Fixes these issues:

* The flagg views are not updated with the new adminbar component.
* Staff flagged view are not included in the main menu.
* Unflagging submissions did not work in the user and staff flagged
views, only on dashboard.
* Staff flagged filter was missing from new all-beta view.

Documentation overhaul - Fixing formatting issues, autodoc implementation, and added variables for versions. (#3734)

Closes #3639. 

This is a bit of an overhaul of the docs to make them more
easy to utilize. This changes include:
- Removal of overhanging public aspects of the documentation
- Reformatting of terminal commands to allow for easy copy & pasting
- Updating points of contact
- Screenshot Updates
- Automated code API documentation. [Google's docstring
style](https://github.com/google/styleguide/blob/gh-pages/pyguide.md#38-comments-and-docstrings)
should be used.
- Added variables for things like software versions & packages.
- Unless python & node version are manually specified, when docs are
built these will be pulled from
[`.nvmrc`](https://github.com/HyphaApp/hypha/blob/main/.nvmrc) &
[`.python-version`](https://github.com/HyphaApp/hypha/blob/main/.python-version)
- Consolidated the production and development guides into one location
(both under `Setup` rather than one under `Getting Started` and one
under `Setup`), and updated them to be similar to one another.
- Added different steps for getting Hypha development deployed under
multiple OSs

- Keeps the migrations to delete the public tables
- Updates and adds a global footer (admin configurable)
- Update the layout of homepage

Fixes #3110 #3559


## Test Steps

- [ ] Remove the public site, go to "Wagtail Admin" > "Pages", set the
"Apply Home Page" as the default page of the site. Remove the public
site page
 - [ ] Do regression of the whole site

---------

Co-authored-by: Wes Appler <wes@opentech.fund>

## Description

Closes #3545.

This creates the option to require a user to preview their form before
submitting it. The requirement is set on a per fund/lab basis, and is a
~required checkbox when the lab/fund is configured in Wagtail admin~
global Django configuration option. The preview first saves the
application as a draft, then presents the user with a preview of their
application. Upon viewing, the user can either edit or submit as seen in
the flow diagram below.

Also, removes breadcrumbs and StoryBock

Depends on #3720

- Keep the app installed so the delete table migrations could run
- Update sandbox-db with removed tables

Depends on #3715

The workflows page in the docs had duplicate info about each of the work
with just an addition screenshot of workflow stages section.

Update and merges the screenshot with the existing sections about
different workflows

This is part of public site removal effort

Configured setting for default visibility of review. It can be set as
**private** or **reviewers**.

- Private: Visible only to staff.
- Reviewers: Visible to other reviewers and staff.

**Setting to consider:**

- ```REVIEW_VISIBILITY_DEFAULT ```

Closes #3417

---------

Co-authored-by: Fredrik Jonsson <frjo@xdeb.org>

closes #3080

Fixes #ISSUEID

This PR is depended on #3521 

- [x] Passwordless login
- [x] Passwordless signup 
- [x] Allow user to set a password after going to profile.
- [x] Allow user to change their email even if they don't have an email
set.
- [x] Allow user to add their name in the application form if name is
not present in the user account.
- [x] Don't display "Dashboard" link if the user does't have permission
to access to it.
- [x] Allow to use to setup 2FA without account password.
- [x] Display user content on the login screen, if configured (it is an
existing feature)
- [x] If 2FA is enforced, allow the user to submit the application
without setting up 2FA
- [x] Add email re-verification option to elevate, sudo mode, apart from
password
- [x] Update landing page after application submission, on success it
redirects now.
- [x] Update ENABLE_PUBLIC_SIGNUP and FORCE_LOGIN_FOR_APPLICATION to
true by default

# Login/Signup Flow


![image](https://github.com/HyphaApp/hypha/assets/236356/91c22cb1-bd1f-4665-98e2-0350829a5807)


## Updated Login Page with Registration Enabled

![Screenshot 2023-09-13 at 07 53
06@2x](https://github.com/HyphaApp/hypha/assets/236356/424fa2f6-a519-44e3-a9ec-449815dd39b2)


## After providing the email ID

The messaging is kept neutral to hide if the user is already registered
or not. The email will contain more detail, if the account exist or not.

![Screenshot 2023-09-13 at 07 57
27@2x](https://github.com/HyphaApp/hypha/assets/236356/7577447b-edf2-496e-94ca-3c98a8f2f075)

Login email copy
![Screenshot 2023-09-13 at 08 08
36@2x](https://github.com/HyphaApp/hypha/assets/236356/ab2d3e90-da2e-40ec-9f7e-bbb8d9e7235f)

## Signup

New Account Email copy
![Screenshot 2023-09-21 at 07 08
52@2x](https://github.com/HyphaApp/hypha/assets/236356/cb14350b-1cfb-4869-b863-ebbb95701089)

### Profile Page just after signup 
The user after clicking on the signup link in the email is redirect to
homepage. No dashboard is available as the user doesn't have applicant
role. If they click on the "profile" button they see this page with open
to update profile and setup a password and enable 2FA.

If the user decide to change the email, password is not asked if not
password is set, instead an email is sent to authorize the email change.

![Screenshot 2023-09-22 at 08 50
21@2x](https://github.com/HyphaApp/hypha/assets/236356/7ed0cb97-a7ca-49fe-aef5-de8f3890db1e)


## Updated "Sudo" mode page

### For account with password

![Screenshot 2023-10-31 at 7  49
38@2x](https://github.com/HyphaApp/hypha/assets/236356/fe27ad75-7e4b-4226-89c1-ddd7a5548944)

After clicking on the "Send a confirmation code to your email" link

![Screenshot 2023-10-31 at 8  03
28@2x](https://github.com/HyphaApp/hypha/assets/236356/bf7a4098-fd0f-4d55-9850-0862da69d808)


![Screenshot 2023-10-31 at 7  51
03@2x](https://github.com/HyphaApp/hypha/assets/236356/3768e87f-d105-4d54-9cd6-2e2b8a81fa2f)


### For account without password

![Screenshot 2023-10-31 at 7  53
44@2x](https://github.com/HyphaApp/hypha/assets/236356/8c84181a-43ce-4afe-a5be-758e3f0e55f8)


## Updated disable 2FA page

It requires "Sudo" mode, instead of password now. 

![Screenshot 2023-10-31 at 7  48
01@2x](https://github.com/HyphaApp/hypha/assets/236356/2b5c8bd1-27ea-42cd-9c84-608bb351631c)

The images are linked relative to page now. This prevents the mkdocs
warnings and also let these images render itself nicely inside the
editor or github interface.

This way of referencing also helps for future if the docs get deployed
to a path instead of a top-level domain

Use hypha brand color for documentation #1269A1

Fixes #3567

Co-authored-by: Saurabh Kumar <theskumar@users.noreply.github.com>
Co-authored-by: Sandeep Chauhan <sandeepsajan0@gmail.com>

Fixes #3560

Adds the settings:

```
# Should staff be able to export submissions.
SUBMISSIONS_EXPORT_ACCESS_STAFF = env.bool('SUBMISSIONS_EXPORT_ACCESS_STAFF', True)

# Should staff admins be able to export submissions.
SUBMISSIONS_EXPORT_ACCESS_STAFF_ADMIN = env.bool('SUBMISSIONS_EXPORT_ACCESS_STAFF_ADMIN', True)

```

Add black and prettier check to lint

Fixes #3529

- Add black, djhtml, prettier
- Add precommit


This PR add configurations for black, djhtml and prettier.

- black is used for formatting python files
- djhtml for formatting html files. Use `{# fmt: off #}` and `{# fmt: on
#}` where needed.
- prettier for formatting of sass,css,yml and js files

Note: prettier picks up some of it's config from `.editorconfig`, so
it's updated appropriately

Formating of mardown files, minified or vendored js files are ignored.

Formatting used off-the-self rules for better consistency with the
community as large.

The formatting is not applied to all the files as it will introduce a
lot of merge conflict with
current PRs, instead `pre-commit` config is provide which can be
installed by `precommit install`
locally. It will format only the modified files in the PR/commits. 

Once majority of the current active PRs are either rebased & formatted
using precommit or merged, we can
run the `make fmt` on the full repo and activate additional prettier and
black checks in our lint rules.

The modified sass files fixes the eslint error that would came up if we
were to apply the prettier formatter on them.

Fixes #3500

Fixes #3290

Adds an organization name column to the submission table. To effect that
change, a new unique block needed to be added. I did test that the
column will not show up when added to
`SUBSMISSION_TABLE_EXCLUDED_FIELDS`

---------

Co-authored-by: Ghulam Murtaza <gmurtaza@opentechstrategies.com>
Co-authored-by: Frank Duncan <frank@kank.net>
Co-authored-by: Fredrik Jonsson <frjo@xdeb.org>

When following docs to set up a development environment, without this
change one would see this error:

> Unknown command: 'wagtailupdatesite'. Did you mean
> wagtail_update_index?

Fixes #3452 

Current project views are that the docker setup isn't the best way to
roll out to prod. Adding that to the docs gives readers a better idea of
what to expect as an outcome from this section.

Fixes https://github.com/HyphaApp/hypha-site/issues/5

Fixes #3430

- [x] Simplified code
- [x] Use postgres FTS search
- [x] Improve UX for filters
- [x]  Improve submission listing
- [x] Add filter for submission date, OTF have asked about this.
- [x] Add submission ID search, see
https://github.com/HyphaApp/hypha/pull/3294
- [x]   Make sure the batch actions are working 
- [x]   Permissions check for batch actions
- [x] Ensure search index works after submissions is updated
- [x] ~Integrate Django messages framework with htmx responses~ (Not
needed)
- [x] [Fix Polynomial regular expression used on uncontrolled
data](https://github.com/HyphaApp/hypha/security/code-scanning/74

)
- [ ] make bulk update status working, currently it's hidden.

---------

Co-authored-by: Fredrik Jonsson <frjo@xdeb.org>

Fixes: #3112

---------

Co-authored-by: Saurabh Kumar <theskumar@users.noreply.github.com>

Fixes #3064

---------

Co-authored-by: Ghulam Murtaza <gmurtaza@opentechstrategies.com>
Co-authored-by: Frank Duncan <frank@kank.net>

- Add a guide on how to enable and setup sentry
- Upgrades sentry-sdk to 1.16.0
- Add optional performance monitoring
- Add Browser Javascript Tracking & Tracing

Run Django and docs preview server, and watch and compile frontend
changes in parallel.

This lets you quickly spin up and run everything in a single terminal.

Fixes #3242

Fixes: #3250

- Add page last edited info on each page
- Update header - site title, repo name & icon
- Disable custom fonts, use system-fonts
- Add copyright info in footer
- Update navigation structure and behaviour
- Add source code view and edit buttons
- Refractor documentation

- Create/update superuser
- Set wagtail site domains

```
❯ ./manage.py initialize
Provide the details below to initialize Hypha Site. Press enter to keep the default value.

Domain of public site  [hypha.test]:
Domain of apply site  [apply.hypha.test]:
Superadmin Email  [superadmin@hypha.test]:
Superadmin Password  [hypha123]:
Site port [8090]:
>>> Created superuser with email superadmin@hypha.test.
>>> Set public site to hypha.test:8090
>>> Set apply site to apply.hypha.test:8090
```

- Remove dependency on python-venv and python-pip
- update how to run test

Fixes #3079