The flow to update are as follow:

1. Run `uv tree -d 1 --outdated` to get  list of packages with updates.
2. Update the package version in `pyproject.toml`
3. Run `uv sync`, this will install all the new packages and sync the
`uv.lock` file.
* The command will alert of any dependency conflicts, you need to
resolve these.
4. Run `pre-commit run --all-files`, this will run the `uv` commands
needed to update all the requirements* files. (Info is taken from the
`uv.lock` file so it must be updated before this step.)